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AGAROSEGELELECTROPHORESISOFDNA1.ThephosphatemoleculesthatmakeupthebackboneofDNAmoleculeshaveahighnegativecharge. 2.TheDNAmoleculesarepulledtothepositiveendbythecurrent,buttheyencounterresistancefromthisagarosemesh.TheDNAmoleculesarepulledtothepositiveendbythecurrent,buttheyencounterresistancefromthisagarosemesh. 3.Thesmallermoleculesareabletonavigatethemeshfasterthanthelargerone,sotheymakeitfurtherdownthegelthanthelargermolecules.ThisishowagaroseelectrophoresisseparatesdifferentDNAmoleculesaccordingtotheirsize.DNA-(agiantanion) cathode-(highnegativecharge)anode+Second:TheDNAmolecularisstainedwithethidium bromidesoyoucanvisualizeaDNAbandsAgarosegelelectrophoresisseparatesDNAfragmentsaccordingtotheirsize.Typically,aDNAmoleculeisdigestedwithrestrictionenzymes,andtheagarosegelelectrophoresisisusedasadiagnostictooltovisualizethefragments.AnelectriccurrentisusedtomovetheDNAmoleculesacrossanagarosegel,whichisapolysaccharidematrixthatfunctionsasasortofsievetohelp“catch”themoleculesastheyaretransportedbytheelectriccurrent.Thistechniquehaslotsofapplications.ElectrophoresisProcedure(processorstep)PouringaGelThirdstep-Loadingsample:Fourthstep-ElectrophoresisFifthstepResult1.Priortogelcasting,driedagaroseisdissolvedinbufferbyheatingandthewarmgelsolutionthenispouredintoamold,whichisfittedwithawell-formingcomb. 2.Thepercentageofagaroseinthegelvaried.Although0.7%agarosegelstypicallyareused,incaseswheretheaccuratesizefractionationofDNAmoleculessmallerthan1kbisrequired,a1,1.5,or2%agarosegelisprepared,dependingontheexpectedsize(s)ofthefragment(s). 3.Agarosegelsaresubmergedinelectrophoresisbufferinahorizontalelectrophoresisapparatus.TheDNAsamplesaremixedwithgeltrackingdyeandloadedintothesamplewells. 4.Electrophoresisusuallyisat150-200mAfor0.5-1houratroomtemperature,dependingonthedesiredseparation.

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